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ComparativeGenomicsToolkit
cactus
Commits
009a5a66
Commit
009a5a66
authored
Jun 13, 2022
by
Glenn Hickey
Browse files
dont build bedtools - use bin release
parent
f9e72026
Pipeline
#1743
failed with stage
in 24 minutes and 10 seconds
Changes
1
Pipelines
3
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Side-by-side
build-tools/downloadPangenomeTools
View file @
009a5a66
...
...
@@ -121,21 +121,14 @@ fi
#bedtools
cd
${
pangenomeBuildDir
}
wget
-q
https://github.com/arq5x/bedtools2/releases/download/v2.
29.1
/bedtools
-2.29.1.tar.gz
tar
-zxf
bedtools
-2.29.1.tar.gz
c
d
bedtools
2
if
[[
$STATIC_CHECK
-ne
1
]]
wget
-q
https://github.com/arq5x/bedtools2/releases/download/v2.
30.0
/bedtools
.static.binary
mv
bedtools
.static.binary bedtools
c
hmod
+x
bedtools
if
[[
$STATIC_CHECK
-ne
1
||
$(
ldd bedtools |
grep
so |
wc
-l
)
-eq
0
]]
then
make
-j
${
numcpu
}
mv
bin/bedtools
${
binDir
}
/bedtools
mv
bedtools
${
binDir
}
else
make static
-j
${
numcpu
}
if
[[
$STATIC_CHECK
-ne
1
||
$(
ldd bin/bedtools.static |
grep
so |
wc
-l
)
-eq
0
]]
then
mv
bin/bedtools.static
${
binDir
}
/bedtools
else
exit
1
fi
exit
1
fi
# dna-brnn
...
...
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