Commit 009a5a66 authored by Glenn Hickey's avatar Glenn Hickey
Browse files

dont build bedtools - use bin release

parent f9e72026
Pipeline #1743 failed with stage
in 24 minutes and 10 seconds
......@@ -121,21 +121,14 @@ fi
#bedtools
cd ${pangenomeBuildDir}
wget -q https://github.com/arq5x/bedtools2/releases/download/v2.29.1/bedtools-2.29.1.tar.gz
tar -zxf bedtools-2.29.1.tar.gz
cd bedtools2
if [[ $STATIC_CHECK -ne 1 ]]
wget -q https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools.static.binary
mv bedtools.static.binary bedtools
chmod +x bedtools
if [[ $STATIC_CHECK -ne 1 || $(ldd bedtools | grep so | wc -l) -eq 0 ]]
then
make -j ${numcpu}
mv bin/bedtools ${binDir}/bedtools
mv bedtools ${binDir}
else
make static -j ${numcpu}
if [[ $STATIC_CHECK -ne 1 || $(ldd bin/bedtools.static | grep so | wc -l) -eq 0 ]]
then
mv bin/bedtools.static ${binDir}/bedtools
else
exit 1
fi
exit 1
fi
# dna-brnn
......
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