Commit 433bf9db authored by Glenn Hickey's avatar Glenn Hickey
Browse files

try to use cuda/driver combo terra actually supports

parent e52e91b2
Pipeline #1763 passed with stage
in 72 minutes and 28 seconds
FROM nvidia/cuda:11.7.0-devel-ubuntu22.04 as builder
FROM nvidia/cuda:11.4.3-devel-ubuntu20.04 as builder
# Prevent dpkg from trying to ask any questions, ever
ENV DEBIAN_FRONTEND noninteractive
# system dependencies are installed by ./installUbuntu.sh below, but we need sudo first
RUN apt-get -qq -y update && \
......@@ -16,7 +19,7 @@ RUN git clone https://github.com/ComparativeGenomicsToolkit/SegAlign.git /WGA_GP
RUN cd /WGA_GPU && rm -rf build && ./scripts/installUbuntu.sh -c && git rev-parse HEAD > /Segalign.commit
# Create a thinner final Docker image with only runtime dependencies
FROM nvidia/cuda:11.7.0-runtime-ubuntu22.04
FROM nvidia/cuda:11.4.3-runtime-ubuntu20.04
# Install runtime dependencies
RUN apt-get -qq -y update && \
......
......@@ -80,7 +80,7 @@ def main(toil_mode=False):
parser.add_argument("--gpu", action="store_true", help="use gpu-enabled lastz in cactus-blast and cactus-preprocess")
parser.add_argument("--gpuType", default="nvidia-tesla-v100", help="GPU type (to set in WDL runtime parameters, use only with --wdl)")
parser.add_argument("--gpuCount", type=int, default=1, help="GPU count (to set in WDL runtime parametersm, use only with --wdl)")
parser.add_argument("--nvidiaDriver", default="440.64.00", help="Nvidia driver version")
parser.add_argument("--nvidiaDriver", default="470.82.01", help="Nvidia driver version")
parser.add_argument("--gpuZone", default="us-central1-a", help="zone used for gpu task")
parser.add_argument("--zone", default="us-west2-a", help="zone used for all but gpu tasks")
......
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