Commit a1a8d489 authored by Glenn Hickey's avatar Glenn Hickey
Browse files

remove python2 -- think bedtools src build was the only thing using it

parent 009a5a66
Pipeline #1745 failed with stage
in 19 minutes and 12 seconds
FROM quay.io/comparative-genomics-toolkit/ubuntu:22.04 AS builder
# apt dependencies for build
RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y build-essential git python3 python3-dev python3-pip zlib1g-dev wget libbz2-dev pkg-config libhdf5-dev liblzo2-dev libtokyocabinet-dev wget liblzma-dev libxml2-dev libssl-dev libpng-dev uuid-dev libcurl4-gnutls-dev libffi-dev python2 python3-virtualenv rsync
RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y build-essential git python3 python3-dev python3-pip zlib1g-dev wget libbz2-dev pkg-config libhdf5-dev liblzo2-dev libtokyocabinet-dev wget liblzma-dev libxml2-dev libssl-dev libpng-dev uuid-dev libcurl4-gnutls-dev libffi-dev python3-virtualenv rsync
# build cactus binaries
RUN mkdir -p /home/cactus
......
......@@ -6,7 +6,7 @@
FROM quay.io/vgteam/dind
# apt dependencies for build
RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y build-essential git python3 python3-dev python3-pip zlib1g-dev wget libbz2-dev pkg-config libhdf5-dev liblzo2-dev libtokyocabinet-dev wget liblzma-dev libxml2-dev libssl-dev libpng-dev uuid-dev libcurl4-gnutls-dev libffi-dev python2
RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y build-essential git python3 python3-dev python3-pip zlib1g-dev wget libbz2-dev pkg-config libhdf5-dev liblzo2-dev libtokyocabinet-dev wget liblzma-dev libxml2-dev libssl-dev libpng-dev uuid-dev libcurl4-gnutls-dev libffi-dev
# apt dependencies for ci
RUN DEBIAN_FRONTEND=noninteractive apt-get install -y default-jre wget docker.io python3-virtualenv libcurl4-gnutls-dev libgnutls28-dev
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