Commits · master · ComparativeGenomicsToolkit / cactus

This project is mirrored from https://*****@github.com/ComparativeGenomicsToolkit/cactus.git. Pull mirroring updated May 24, 2022.

20 May, 2022 1 commit
- Merge pull request #723 from ComparativeGenomicsToolkit/docker-fixes · 3345cc0c
  Glenn Hickey authored May 19, 2022
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Fix CI, which broke due to networkx update
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  3345cc0c
19 May, 2022 2 commits
- fix typo · ebdc6933
  Glenn Hickey authored May 19, 2022
  
  ebdc6933
- networkx version from yesterday breaks cactus · e59bfe85
  Glenn Hickey authored May 19, 2022
  
  e59bfe85
27 Apr, 2022 3 commits
- Merge pull request #713 from ComparativeGenomicsToolkit/fix-udc · 8c56cbf8
  Glenn Hickey authored Apr 27, 2022
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Re-enable UDC in dockerfile
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  8c56cbf8
- re-enable UDC in dockerfile · e96ed13f
  Glenn Hickey authored Apr 27, 2022
  
  e96ed13f
- Merge pull request #711 from ComparativeGenomicsToolkit/fix-udc · 87e0f38e
  Glenn Hickey authored Apr 26, 2022
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update HAL in order to fix UDC support
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  87e0f38e
26 Apr, 2022 2 commits
- disable udc from dockerbuild (hopefully temporarily) · f74bbf56
  Glenn Hickey authored Apr 26, 2022
  
  f74bbf56
- update HAL in order to fix UDC support · 8c895806
  Glenn Hickey authored Apr 26, 2022
  
  8c895806
13 Apr, 2022 1 commit
- Merge pull request #704 from ComparativeGenomicsToolkit/docker-fixes · ae32ffaf
  Glenn Hickey authored Apr 13, 2022
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Fix up cactus-prepare --gpu
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  ae32ffaf
12 Apr, 2022 1 commit
- fix up cactus-prepare --gpu · 3265e260
  Glenn Hickey authored Apr 12, 2022
  
  3265e260
05 Apr, 2022 4 commits
- Merge pull request #703 from ComparativeGenomicsToolkit/docker-fixes · 22011619
  Glenn Hickey authored Apr 05, 2022
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Fix quote fail in recent update to install instructions
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  22011619
- Merge pull request #702 from ComparativeGenomicsToolkit/stderr_bogdown · 93467434
  Glenn Hickey authored Apr 05, 2022
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Dont copy lastz src files into bin/
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  93467434
- Fix quote fail in recent update to install instructions · c6637f89
  Glenn Hickey authored Apr 05, 2022
  
  c6637f89
- dont copy lastz src files into bin/ · 939bef45
  Glenn Hickey authored Apr 05, 2022
  
  939bef45
25 Mar, 2022 3 commits
- Merge pull request #696 from ComparativeGenomicsToolkit/stderr_bogdown · d167d7c7
  Glenn Hickey authored Mar 25, 2022
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Quick add-to-branch test
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  d167d7c7
- update hal to patch halAddToBranch · c5cf6dcd
  Glenn Hickey authored Mar 25, 2022
  
  c5cf6dcd
- quick add-to-branch test · 315e77ad
  Glenn Hickey authored Mar 25, 2022
  
  315e77ad
22 Mar, 2022 6 commits
- Merge pull request #693 from ComparativeGenomicsToolkit/docker-fixes · 89cbad65
  Glenn Hickey authored Mar 22, 2022
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remove bunch of bloat from docker build
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  89cbad65
- remove bunch of bloat from docker build · e7ea9daf
  Glenn Hickey authored Mar 22, 2022
  
  e7ea9daf
- Merge pull request #689 from ComparativeGenomicsToolkit/stderr_bogdown · dc18ec77
  Glenn Hickey authored Mar 22, 2022
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Add test for add-to-node functionality
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  dc18ec77
- add test for add-to-node functionality · 51b14da4
  Glenn Hickey authored Mar 22, 2022
  
  51b14da4
- Merge pull request #686 from ComparativeGenomicsToolkit/stderr_bogdown · 7c181b11
  Glenn Hickey authored Mar 21, 2022
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update hal to fix halReplaceGenome
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  7c181b11
- update hal to fix halReplaceGenomes · 14746277
  Glenn Hickey authored Mar 21, 2022
  
  14746277
21 Mar, 2022 2 commits
- Merge pull request #684 from ComparativeGenomicsToolkit/stderr_bogdown · 92e8e98d
  Glenn Hickey authored Mar 21, 2022
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stop spamming stderr with warnings in cactus_coverage
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  92e8e98d
- stop spamming stderr with warnings in cactus_coverage; they may bog down a buffer · c9e6614d
  Glenn Hickey authored Mar 21, 2022
  
  c9e6614d
14 Mar, 2022 2 commits
- Merge pull request #680 from thiagogenez/bug/gcc-10 · edd40c73
  Glenn Hickey authored Mar 14, 2022
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gcc-10 and above flipped a default from -fcommon to -fno-common.
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  edd40c73
- gcc-10 and above flipped a default from -fcommon to -fno-common. · 13f5738e
  Thiago Genez authored Mar 14, 2022
  
  13f5738e
07 Feb, 2022 2 commits
- Merge pull request #659 from ComparativeGenomicsToolkit/self-loop · c1698cec
  Glenn Hickey authored Feb 07, 2022
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Fix to poa-bar self-alignment bug.
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  c1698cec
- Fix to poa-bar self-alignment bug. · 2647fba5
  benedictpaten authored Feb 06, 2022 and Glenn Hickey committed Feb 07, 2022
  
  2647fba5
04 Feb, 2022 4 commits
- Merge pull request #655 from ComparativeGenomicsToolkit/self-loop · 11b92a64
  Glenn Hickey authored Feb 04, 2022
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Use consistent poa bar for all but trivial alignments
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  11b92a64
- Merge pull request #656 from ComparativeGenomicsToolkit/toil-5.3 · 2dc70081
  Glenn Hickey authored Feb 04, 2022
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Update python installation instructions
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  2dc70081
- update python installation readmes · df0ef9ce
  Glenn Hickey authored Feb 04, 2022
  
  df0ef9ce
- do consistent bar for all but trivial alignments · 83968771
  Glenn Hickey authored Feb 04, 2022
  
  83968771
02 Feb, 2022 1 commit
- Merge pull request #653 from ComparativeGenomicsToolkit/toil-5.3 · fbea0643
  Glenn Hickey authored Feb 02, 2022
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Add Docker Tag override
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  fbea0643
31 Jan, 2022 2 commits
- add docker binary tag override via CACTUS_DOCKER_TAG · 8f01d66a
  Glenn Hickey authored Jan 31, 2022
  
  8f01d66a
- fix pip version at 21, since toil wont build with 22 (due to futures) · dbf1b93d
  Glenn Hickey authored Jan 31, 2022
  
  dbf1b93d
26 Jan, 2022 1 commit
- Merge pull request #649 from ComparativeGenomicsToolkit/slow-reference · ba602d4e
  Glenn Hickey authored Jan 26, 2022
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Small build fixes
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  ba602d4e
25 Jan, 2022 3 commits
- small build fixes · d5f166f1
  Glenn Hickey authored Jan 25, 2022
  
  d5f166f1
- Merge pull request #648 from ComparativeGenomicsToolkit/slow-reference · f1eef402
  Glenn Hickey authored Jan 25, 2022
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Update to newer lastz
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  f1eef402
- prep next release 2.0.5 · d1ad9322
  Glenn Hickey authored Jan 25, 2022
  
  d1ad9322