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ComparativeGenomicsToolkit
cactus
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This project is mirrored from
https://github.com/ComparativeGenomicsToolkit/cactus.git
. Pull mirroring updated
May 14, 2024
.
em
de002e3c
·
All working.
·
Aug 08, 2014
realisticReference
f891df30
·
Don't add implied roots for newick trees with root branchlengths
·
Jun 02, 2014
robustToMissingParalogs
9a0547ad
·
Stab at keeping all dups
·
May 06, 2014
multipleOutgroups
1bde25b2
·
Python xrange() iterates over the *entire* range to see if it contains a value
·
May 05, 2014
useOutgroupsAsNeeded
87301299
·
Config option for multiple outgroups (and change default)
·
Mar 27, 2014
bobsNewMasking
1be23754
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Fixing preprocessor bug, adding more logging for preprocessed
·
Dec 16, 2013
switchingByDivergence
7a8cfee8
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-
·
Nov 20, 2013
filterXDrops
24f06df7
·
All working
·
Oct 11, 2013
betterPreProcessor
92a6fbb5
·
All working
·
Oct 02, 2013
splittingReference
d69dd605
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-
·
Aug 22, 2013
finalBar
094cc262
·
Finished messing with branch.
·
Aug 18, 2013
betterBar
f0af0782
·
Changing bar algorithm to better cope with < n choose 2 pairs of
·
Aug 07, 2013
barWithFewerPairAlignments
f29ea25e
·
All working
·
Aug 06, 2013
stubAlignments
1f02a29c
·
All the code is in place and tests are passing, but I haven't qa'd any
·
Jul 12, 2013
filtering
04d870bc
·
Changing defaults and way single-copy sequence alignments are filtered
·
Jun 11, 2013
removingMafjoin
89785e7e
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-
·
May 01, 2013
simplerPreprocessor
d8eb071d
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-
·
May 01, 2013
newBar
861a8ac2
·
All working
·
Mar 19, 2013
blastSortedOut
7cc2771e
·
-
·
Feb 28, 2013
simplerFasterBlast
19fa3b95
·
Not yet working
·
Feb 26, 2013
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