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cactus
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This project is mirrored from
https://*****@github.com/ComparativeGenomicsToolkit/cactus.git
. Pull mirroring updated
Apr 29, 2024
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barWithFewerPairAlignments
f29ea25e
·
All working
·
Aug 06, 2013
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betterBar
f0af0782
·
Changing bar algorithm to better cope with < n choose 2 pairs of
·
Aug 07, 2013
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finalBar
094cc262
·
Finished messing with branch.
·
Aug 18, 2013
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splittingReference
d69dd605
·
-
·
Aug 22, 2013
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betterPreProcessor
92a6fbb5
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All working
·
Oct 02, 2013
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filterXDrops
24f06df7
·
All working
·
Oct 11, 2013
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switchingByDivergence
7a8cfee8
·
-
·
Nov 20, 2013
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bobsNewMasking
1be23754
·
Fixing preprocessor bug, adding more logging for preprocessed
·
Dec 16, 2013
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useOutgroupsAsNeeded
87301299
·
Config option for multiple outgroups (and change default)
·
Mar 27, 2014
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multipleOutgroups
1bde25b2
·
Python xrange() iterates over the *entire* range to see if it contains a value
·
May 05, 2014
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robustToMissingParalogs
9a0547ad
·
Stab at keeping all dups
·
May 06, 2014
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realisticReference
f891df30
·
Don't add implied roots for newick trees with root branchlengths
·
Jun 02, 2014
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em
de002e3c
·
All working.
·
Aug 08, 2014
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coalesceEverythingEarly
94de5127
·
Pathologically coalesce every block early
·
Sep 01, 2014
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coalesceEverythingLate
3374c155
·
debug info on single-degree blocks (not sure if it's accurate yet)
·
Sep 04, 2014
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makeConfidentSplitsFirst
79fb3e2b
·
Merge branch 'phylogeny' into makeConfidentSplitsFirst
·
Oct 16, 2014
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splitBlocksBeforeLastMelt
4586c3a2
·
Test out a branch that simply splits before the last melt phase.
·
Oct 20, 2014
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phylogeny
d5fc52f9
·
more logging!
·
Nov 04, 2014
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barRescue
04322d80
·
oops, fix compile error
·
Nov 05, 2014
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phylogenyGreedySplitAndRescue
8fadc9bb
·
remove profiler stuff so it actually compiles
·
Nov 24, 2014
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