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cactus
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This project is mirrored from
https://github.com/ComparativeGenomicsToolkit/cactus.git
. Pull mirroring updated
May 15, 2024
.
check-setup-parameters
905f1da3
·
correctly check for cactus_setup required arguments rather than use assert
·
Feb 28, 2020
!172
subtree-alignment-guide
9dd80200
·
work on subtree alignment guide
·
Mar 11, 2020
issues/103/xml-config-parser-error
1a6835de
·
detect when --root is a leaf node
·
Mar 12, 2020
!177
ui-fixes
edf7a65a
·
default to local binaries and error message for 1 core
·
Mar 23, 2020
!184
issues/196/singularity
a10cb036
·
Corrected unqualified references to subprocess members
·
Apr 02, 2020
!197
stack-dump-on-signal
2a793f1a
·
add ability for cactus python main programs to dump all thread stacks if sigusr1 is received
·
Apr 03, 2020
!198
submodule-update
1d317a63
·
update sonlib to version that forces no redis
·
Apr 04, 2020
!200
py3-fixes
62a40a58
·
fix doc
·
May 07, 2020
!233
zero-len-branches
509e659c
·
turn on asserts in C code
·
May 11, 2020
!234
adamnovak-patch-1
e358bbe9
·
Encode Singularity tool names before hashing
·
May 13, 2020
!239
adamnovak-patch-3
3bc3942a
·
Fix typo'd variable name
·
May 20, 2020
!248
log-time
b78fad4c
·
Let Toil drive logging
·
May 27, 2020
!260
issues/250/blastz-memory
68e9c48c
·
fixed various problems with memory/disk, dont default to sys.maxsize
·
May 30, 2020
!254
issues/258/cromwell-test-workdir
d360a066
·
remove uncessary quote escapes
·
Jun 16, 2020
update-sonlib
d775f626
·
fix hal2fasta invocation in wdl
·
Jul 08, 2020
!265
caf-benchmark
1bea3459
·
add filter sanity check
·
Jul 21, 2020
faster-caf
00d205c7
·
apply caf alignment filters to secondary as well as primary alignments
·
Sep 10, 2020
!315
poa_ben
466a28e0
·
Merge branch 'poa' into poa_ben
·
Oct 18, 2020
poa-chunked
728341dd
·
turn inMemory on by default for halAppendCactusSubtree
·
Oct 21, 2020
!335
poa_ben_all_pairs
3693b77f
·
bring back all-pairs
·
Oct 22, 2020
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