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cactus
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This project is mirrored from
https://*****@github.com/ComparativeGenomicsToolkit/cactus.git
. Pull mirroring updated
Apr 29, 2024
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em2
1b32ab1c
·
Fix
·
Dec 02, 2014
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ogselection
cf75aa8b
·
Merge remote branch 'origin/development' into ogselection
·
Dec 03, 2014
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outgroupDepth
0f37d29b
·
Remove root outgroup options and add basic "does it crash" test
·
Feb 09, 2015
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LAST
2ea20111
·
separate temp files per blast job so cluster jobs don't clash
·
Feb 11, 2015
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development
67dfae7e
·
Fix a frustrating ktservercontrol crash with very short jobs
·
Jun 25, 2015
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onlineCactus
e5e416ca
·
stop caf refusing to use multiple offline melting rounds
·
Jan 22, 2016
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megablockHeuristics
c192f7f5
·
maximum-%-redundancy and batching heuristics
·
Feb 18, 2016
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removeRecoverableChains
be4e931d
·
attach all ends to cactus root when checking recoverability
·
Mar 22, 2016
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toil
17bfa16d
·
Use FileID.size to estimate disk requirements for blast and preprocessor
·
Aug 21, 2016
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repeatSampling
22d1f37e
·
Add option for using repeatMasker annotations to sample repeats
·
Sep 30, 2016
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toilNoCaching
2fdba126
·
Don't set memory, cores in constructor
·
Sep 30, 2016
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nanoporeHacks
eea62d88
·
Make the "bad" distance 3 std devs above the mean single-copy distance
·
Oct 07, 2016
!14
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fix-tests
1f0585e6
·
Add networkx to dependencies
·
Oct 14, 2016
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reorg
f24b244b
·
Update remaining references to old cactus_config.xml file
·
Nov 07, 2016
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oldMasterFixes
a408a215
·
Actually mask matrices larger than repeatMaskMatrixBiggerThanThis
·
Nov 18, 2016
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ancestralRagout
a0008589
·
Integrate Ragout API
·
Dec 16, 2016
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splitUpBigRecords
159e6944
·
Split up records corresponding to large flowers - avoid storing big
·
Feb 06, 2017
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repeats-iterativeSampling
43864194
·
-
·
Feb 12, 2017
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fix-the-stupid-ci
e770b079
·
Fix more SON_TRACE_DATASETS problems in the tests
·
Feb 16, 2017
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repeatmasking-infiles-as-files
dc8c4f27
·
Merge branch 'toil-docker' of...
·
Feb 17, 2017
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